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1

Predictive Modeling of Drug Sensitivity || Predictive modeling based on random forests

Year:

2017

Language:

english

File:

PDF, 830 KB

english, 2017

2

Design of Probabilistic Random Forests with Applications to Anticancer Drug Sensitivity Prediction

Rahman, Raziur, Haider, Saad, Ghosh, Souparno, Pal, Ranadip

Journal:

Cancer Informatics

Year:

2015

Language:

english

File:

PDF, 975 KB

english, 2015

3

Comparative non-cholinergic neurotoxic effects of paraoxon and diisopropyl fluorophosphate (DFP) on human neuroblastoma and astrocytoma cell lines

Yongchang Qian, Jijayanagaram Venkatraj, Rola Barhoumi, Ranadip Pal, Aniruddha Datta, James R. Wild, Evelyn Tiffany-Castiglioni

Journal:

Toxicology and Applied Pharmacology

Year:

2007

Language:

english

File:

PDF, 825 KB

english, 2007

4

[IEEE 2009 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS) - Minneapolis, MN, USA (2009.05.17-2009.05.21)] 2009 IEEE International Workshop on Genomic Signal Processing and Statistics - Quantification of data extraction noise in probabilistic Boolean Network modeling

Pal, Ranadip, Datta, Aniruddha, Dougherty, Edward

Year:

2009

Language:

english

File:

PDF, 2.16 MB

english, 2009

5

GENERATION OF STATIONARY CONTROL POLICIES WITH BEST EXPECTED PERFORMANCE FOR A FAMILY OF MARKOV CHAINS

BERLOW, NOAH, PAL, RANADIP

Journal:

Journal of Biological System

Year:

2012

Language:

english

File:

PDF, 583 KB

english, 2012

6

[IEEE 2014 IEEE Global Conference on Signal and Information Processing (GlobalSIP) - Atlanta, GA, USA (2014.12.3-2014.12.5)] 2014 IEEE Global Conference on Signal and Information Processing (GlobalSIP) - Multi-objective optimization of ensemble of regression trees using genetic algorithms

Wan, Qian, Pal, Ranadip

Year:

2014

Language:

english

File:

PDF, 363 KB

english, 2014

7

Predictive Modeling of Drug Sensitivity || Introduction

Year:

2017

File:

PDF, 840 KB

2017

8

Representation of features as images with neighborhood dependencies for compatibility with convolutional neural networks

Bazgir, Omid, Zhang, Ruibo, Dhruba, Saugato Rahman, Rahman, Raziur, Ghosh, Souparno, Pal, Ranadip

Journal:

Nature Communications

Year:

2020

File:

PDF, 1.62 MB

2020

9

Inference of dynamic biological networks based on responses to drug perturbations

Berlow, Noah, Davis, Lara, Keller, Charles, Pal, Ranadip

Journal:

EURASIP Journal on Bioinformatics and Systems Biology

Year:

2014

Language:

english

File:

PDF, 1.48 MB

english, 2014

10

[IEEE 2018 IEEE EMBS International Conference on Biomedical & Health Informatics (BHI) - Las Vegas, NV, USA (2018.3.4-2018.3.7)] 2018 IEEE EMBS International Conference on Biomedical & Health Informatics (BHI) - An investigation of proteomic data for application in precision medicine

Matlock, Kevin, Dhruba, Saugato Rahman, Nazir, Moazzam, Pal, Ranadip

Year:

2018

Language:

english

File:

PDF, 177 KB

english, 2018

11

Application of transfer learning for cancer drug sensitivity prediction

Dhruba, Saugato Rahman, Rahman, Raziur, Matlock, Kevin, Ghosh, Souparno, Pal, Ranadip

Journal:

BMC Bioinformatics

Year:

2018

Language:

english

File:

PDF, 1.53 MB

english, 2018

12

Predictive Modeling of Drug Sensitivity || Combination therapeutics

Year:

2017

File:

PDF, 2.96 MB

2017

13

[ACM Press the ACM Conference - Orlando, Florida (2012.10.07-2012.10.10)] Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine - BCB '12 - Complexity reduction of stochastic master equation simulation based on Kronecker product analysis

Caglar, Mehmet Umut, Pal, Ranadip

Year:

2012

Language:

english

File:

PDF, 548 KB

english, 2012

14

[IEEE 2011 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS) - San Antonio, TX, USA (2011.12.4-2011.12.6)] 2011 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS) - A novel critical time analysis approach for genetic regulatory networks

Bhattacharya, Sonal, Pal, Ranadip

Year:

2011

Language:

english

File:

PDF, 172 KB

english, 2011

15

[IEEE 2006 IEEE International Workshop on Genomic Signal Processing and Statistics - College Station, TX, USA (2006.05.28-2006.05.30)] 2006 IEEE International Workshop on Genomic Signal Processing and Statistics - Altering steady-state probabilities in probabilistic Boolean networks

Pal, Ranadip, Datta, Aniruddha, Dougherty, Edward

Year:

2006

Language:

english

File:

PDF, 120 KB

english, 2006

16

[IEEE 2006 IEEE International Workshop on Genomic Signal Processing and Statistics - College Station, TX, USA (2006.05.28-2006.05.30)] 2006 IEEE International Workshop on Genomic Signal Processing and Statistics - Reducing the complexity of a PBN while preserving its dynamical structure

Ivanov, Ivan, Pal, Ranadip, Dougherty, Edward

Year:

2006

Language:

english

File:

PDF, 176 KB

english, 2006

17

[IEEE 2016 IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI) - Las Vegas, NV, USA (2016.2.24-2016.2.27)] 2016 IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI) - Analyzing drug sensitivity prediction based on dose response curve characteristics

Rahman, Raziur, Pal, Ranadip

Year:

2016

Language:

english

File:

PDF, 652 KB

english, 2016

18

Sstack: an R package for stacking with applications to scenarios involving sequential addition of samples and features

Matlock, Kevin, Rahman, Raziur, Ghosh, Souparno, Pal, Ranadip, Hancock, John

Journal:

Year:

2019

File:

PDF, 282 KB

2019

19

[IEEE 2006 IEEE International Workshop on Genomic Signal Processing and Statistics - College Station, TX, USA (2006.05.28-2006.05.30)] 2006 IEEE International Workshop on Genomic Signal Processing and Statistics - Synthesizing Boolean networks with a given attractor structure

Pal, Ranadip, Ivanov, Ivan, Datta, Aniruddha, Bittner, Michael, Dougherty, Edward

Year:

2006

Language:

english

File:

PDF, 131 KB

english, 2006

20

[IEEE 2010 IEEE International Conference on Acoustics, Speech and Signal Processing - Dallas, TX, USA (2010.03.14-2010.03.19)] 2010 IEEE International Conference on Acoustics, Speech and Signal Processing - Classification of Alzheimer's disease and mild cognitive impairment by pattern recognition of EEG power and coherence

Akrofi, Kwaku, Pal, Ranadip, Baker, Mary C., Nutter, Brian S., Schiffer, Randolph W.

Year:

2010

Language:

english

File:

PDF, 182 KB

english, 2010

21

[IEEE 2011 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS) - San Antonio, TX, USA (2011.12.4-2011.12.6)] 2011 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS) - A novel approach for tumor sensitivity prediction and combination therapy design for targeted drugs

Berlow, Noah, Pal, Ranadip

Year:

2011

Language:

english

File:

PDF, 174 KB

english, 2011

22

[IEEE 2008 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS) - Phoenix, AZ, USA (2008.06.8-2008.06.10)] 2008 IEEE International Workshop on Genomic Signal Processing and Statistics - Comparison of robust strategies for the control of gene regulatory networks

Pal, Ranadip, Datta, Aniruddha, Dougherty, Edward

Year:

2008

Language:

english

File:

PDF, 338 KB

english, 2008

23

FOREWORD

Dougherty, Edward R., Yoon, Byung-Jun, Qian, Xiaoning, Pal, Ranadip

Journal:

Journal of Biological System

Year:

2012

Language:

english

File:

PDF, 82 KB

english, 2012

24

[IEEE 2007 American Control Conference - New York, NY, USA (2007.07.9-2007.07.13)] 2007 American Control Conference - Robust Intervention in Probabilistic Boolean Networks

Pal, Ranadip, Datta, Aniruddha, Dougherty, Edward R.

Year:

2007

Language:

english

File:

PDF, 287 KB

english, 2007

25

Intervention in Probabilistic Gene Regulatory Networks

Datta, Aniruddha, Pal, Ranadip, Dougherty, Edward

Journal:

Current Bioinformatics

Year:

2006

Language:

english

File:

PDF, 848 KB

english, 2006

26

[IEEE 2009 22nd IEEE International Symposium on Computer-Based Medical Systems (CBMS) - Albuquerque, NM, USA (2009.08.2-2009.08.5)] 2009 22nd IEEE International Symposium on Computer-Based Medical Systems - Steady-state preserving reduction for genetic regulatory network models

Pal, Ranadip, Bhattacharya, Sonal

Year:

2009

Language:

english

File:

PDF, 407 KB

english, 2009

27

[IEEE 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) - Chicago, IL (2014.8.26-2014.8.30)] 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society - Non-contact multi-radar smart probing of body orientation based on micro-Doppler signatures

Yiran Li,, Pal, Ranadip, Changzhi Li,

Year:

2014

Language:

english

File:

PDF, 935 KB

english, 2014

28

[ACM Press the 2018 ACM International Conference - Washington, DC, USA (2018.08.29-2018.09.01)] Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics - BCB '18 - Recursive Model for Dose-time Responses in Pharmacological Studies

Rahman, Aminur, Dhruba, Saugato Rahman, Ghosh, Souparno, Pal, Ranadip

Year:

2018

File:

PDF, 1.96 MB

2018

29

[IEEE 2012 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS) - Washington, DC, USA (2012.12.2-2012.12.4)] Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS) - Anticancer drug sensitivity analysis: An integrated approach applied to Erlotinib sensitivity prediction in the CCLE database

Pal, Ranadip, Berlow, Noah, Haider, Saad

Year:

2012

Language:

english

File:

PDF, 142 KB

english, 2012

30

[IEEE 2009 American Control Conference - St. Louis, MO, USA (2009.06.10-2009.06.12)] 2009 American Control Conference - Adaptive intervention in Probabilistic Boolean Networks

Layek, Ritwik, Datta, Aniruddha, Pal, Ranadip, Dougherty, Edward R.

Year:

2009

Language:

english

File:

PDF, 425 KB

english, 2009

31

Stochastic Model Simulation Using Kronecker Product Analysis and Zassenhaus Formula Approximation

Caglar, Mehmet Umut, Pal, Ranadip

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2013

Language:

english

File:

PDF, 978 KB

english, 2013

32

[IEEE 2012 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS) - Washington, DC, USA (2012.12.2-2012.12.4)] Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS) - Combination therapy design for targeted therapeutics from a drug-protein interaction perspective

Haider, Saad, Berlow, Noah, Pal, Ranadip, Davis, Lara, Keller, Charles

Year:

2012

Language:

english

File:

PDF, 182 KB

english, 2012

33

Robust Approaches for Genetic Regulatory Network Modeling and Intervention: A review of recent advances

Pal, Ranadip, Bhattacharya, Sonal, Caglar, Mehmet

Journal:

IEEE Signal Processing Magazine

Year:

2012

Language:

english

File:

PDF, 1.01 MB

english, 2012

34

[IEEE 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) - Chicago, IL (2014.8.26-2014.8.30)] 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society - Gesture recognition for smart home applications using portable radar sensors

Qian Wan,, Yiran Li,, Changzhi Li,, Pal, Ranadip

Year:

2014

Language:

english

File:

PDF, 1.69 MB

english, 2014

35

Deep Functional and Molecular Characterization of a High-Risk Undifferentiated Pleomorphic Sarcoma

Berlow, Noah E., Grasso, Catherine S., Quist, Michael J., Cheng, Mingshan, Gandour-Edwards, Regina, Hernandez, Brian S., Michalek, Joel E., Ryan, Christopher, Spellman, Paul, Pal, Ranadip, Million, Ly

Journal:

Year:

2020

File:

PDF, 6.02 MB

2020

36

Selected Research Articles from the 2019 International Workshop on Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC)

Yoon, Byung-Jun, Qian, Xiaoning, Kahveci, Tamer, Pal, Ranadip

Journal:

Year:

2020

File:

PDF, 193 KB

2020

37

Selected articles from the IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS'2011)

Ranadip Pal, Yufei Huang, Yidong Chen

Journal:

Year:

2012

Language:

english

File:

PDF, 105 KB

english, 2012

38

A Copula Based Approach for Design of Multivariate Random Forests for Drug Sensitivity Prediction

Haider, Saad, Rahman, Raziur, Ghosh, Souparno, Pal, Ranadip, Gursoy, Attila

Journal:

Year:

2015

Language:

english

File:

PDF, 3.58 MB

english, 2015

39

Algorithms for Drug Sensitivity Prediction

De Niz, Carlos, Rahman, Raziur, Zhao, Xiangyuan, Pal, Ranadip

Journal:

Year:

2016

Language:

english

File:

PDF, 3.16 MB

english, 2016

40

Selected research articles from the 2018 International Workshop on Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC)

Yoon, Byung-Jun, Qian, Xiaoning, Kahveci, Tamer, Pal, Ranadip

Journal:

BMC Bioinformatics

Year:

2019

Language:

english

File:

PDF, 188 KB

english, 2019

41

Modeling and inference of genetic interactions

Journal:

Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery

Year:

2013

Language:

english

File:

PDF, 740 KB

english, 2013

42

[ACM Press the 8th ACM International Conference - Boston, Massachusetts, USA (2017.08.20-2017.08.23)] Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics - ACM-BCB '17 - Investigation of Model Stacking for Drug Sensitivity Prediction

Matlock, Kevin, De Niz, Carlos, Rahman, Raziur, Ghosh, Souparno, Pal, Ranadip

Year:

2017

Language:

english

File:

PDF, 712 KB

english, 2017

43

Heterogeneity Aware Random Forest for Drug Sensitivity Prediction

Rahman, Raziur, Matlock, Kevin, Ghosh, Souparno, Pal, Ranadip

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 2.54 MB

english, 2017

44

Deep Sequencing Data Analysis

Ghosh, Bijoy K., Datta, Aniruddha, Pal, Ranadip

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2018

Language:

english

File:

PDF, 136 KB

english, 2018

45

Recursive model for dose-time responses in pharmacological studies

Dhruba, Saugato Rahman, Rahman, Aminur, Rahman, Raziur, Ghosh, Souparno, Pal, Ranadip

Journal:

BMC Bioinformatics

Year:

2019

Language:

english

File:

PDF, 2.60 MB

english, 2019

46

Evidence for an Unanticipated Relationship between Undifferentiated Pleomorphic Sarcoma and Embryonal Rhabdomyosarcoma

Brian P. Rubin, Koichi Nishijo, Hung-I Harry Chen, Xiaolan Yi, David P. Schuetze, Ranadip Pal, Suresh I. Prajapati, Jinu Abraham, Benjamin R. Arenkiel, Qing-Rong Chen, Sean Davis, Amanda T. McCleish,

Journal:

Year:

2011

Language:

english

File:

PDF, 3.47 MB

english, 2011

47

A new approach for prediction of tumor sensitivity to targeted drugs based on functional data

Berlow, Noah, Davis, Lara E, Cantor, Emma L, Séguin, Bernard, Keller, Charles, Pal, Ranadip

Journal:

BMC Bioinformatics

Year:

2013

Language:

english

File:

PDF, 715 KB

english, 2013

48

On the fast convergence modeling and accurate calculation of PV output energy for operation and planning studies

Navabi, Reza, Abedi, Sajjad, Hosseinian, Seyed Hossein, Pal, Ranadip

Journal:

Energy Conversion and Management

Year:

2015

Language:

english

File:

PDF, 690 KB

english, 2015

49

An Integrated Approach to Anti-Cancer Drug Sensitivity Prediction

Berlow, Noah, Haider, Saad, Wan, Qian, Geltzeiler, Mathew, Davis, Lara E., Keller, Charles, Pal, Ranadip

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2014

Language:

english

File:

PDF, 1.37 MB

english, 2014

50

IntegratedMRF: random forest-based framework for integrating prediction from different data types

Rahman, Raziur, Otridge, John, Pal, Ranadip

Journal:

Year:

2017

Language:

english

File:

PDF, 642 KB

english, 2017

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